STRINGSTRING
Bra006742 protein (Brassica rapa) - STRING interaction network
"Bra006742" - AT5G58880 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006742AT5G58880 (E=1e-226) | unknown protein (1003 aa)    
Predicted Functional Partners:
Bra027669
AT1G63930 (E=1e-183) | unknown protein (412 aa)
           
  0.542
Bra028894
AT5G01280 (E=1e-065) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- sperm cell, male gametophyte; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT3G09000.1); Has 40332 Blast hits to 19265 proteins in 905 species- Archae - 97; Bacteria - 3595; Metazoa - 17370; Fungi - 8276; Plants - 837; Viruses - 1209; Other Eukaryotes - 8948 (source- NCBI BLink). (506 aa)
           
  0.541
Bra038535
AT2G22290 (E=2e-093) ATRABH1D, ATRAB-H1D, RAB-H1D, ATRAB6 | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D); GTP binding (207 aa)
           
  0.511
Bra009479
AT5G04180 (E=7e-126) ATACA3, ACA3 | ACA3 (ALPHA CARBONIC ANHYDRASE 3); carbonate dehydratase/ zinc ion binding (276 aa)
           
  0.483
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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