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Bra006745 protein (Brassica rapa) - STRING interaction network
"Bra006745" - AT3G47160 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006745AT3G47160 (E=1e-110) | protein binding / zinc ion binding (247 aa)    
Predicted Functional Partners:
Bra031225
AT2G22010 (E=0.0) RKP | RKP (Related to KPC1); protein binding / zinc ion binding (1274 aa)
     
 
    0.669
Bra031783
AT1G11800 (E=2e-176) | endonuclease/exonuclease/phosphatase family protein (420 aa)
       
      0.594
Bra016087
AT1G72070 (E=5e-032) | DNAJ heat shock N-terminal domain-containing protein (201 aa)
           
  0.569
Bra033276
AT1G01230 (E=2e-053) | ORMDL family protein (179 aa)
           
  0.477
Bra033561
AT4G38340 (E=6e-244) | RWP-RK domain-containing protein (681 aa)
           
  0.414
Bra037214
AT2G14170 (E=4e-258) ALDH6B2 | ALDH6B2; 3-chloroallyl aldehyde dehydrogenase/ methylmalonate-semialdehyde dehydrogenase (acylating)/ oxidoreductase (527 aa)
           
  0.406
Bra030396
AT1G52240 (E=4e-252) ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor (537 aa)
           
  0.406
Bra018956
AT1G52240 (E=2e-248) ATROPGEF11, ROPGEF11 | ROPGEF11 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 11); Rho guanyl-nucleotide exchange factor (536 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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