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Bra006746 protein (Brassica rapa) - STRING interaction network
"Bra006746" - AT5G58730 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
Bra006746AT5G58730 (E=2e-039) | pfkB-type carbohydrate kinase family protein (113 aa)    
Predicted Functional Partners:
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
     
  0.932
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
 
  0.932
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
   
  0.773
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
   
  0.773
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
       
  0.763
Bra040406
AT3G04790 (E=2e-127) | ribose 5-phosphate isomerase-related (276 aa)
       
  0.708
Bra040120
AT3G04790 (E=8e-114) | ribose 5-phosphate isomerase-related (275 aa)
       
  0.708
Bra033747
AT5G44520 (E=1e-124) | ribose 5-phosphate isomerase-related (283 aa)
       
  0.708
Bra024892
AT2G01290 (E=1e-101) | ribose-5-phosphate isomerase (268 aa)
       
  0.708
Bra014328
AT2G01290 (E=9e-132) | ribose-5-phosphate isomerase (267 aa)
       
  0.708
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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