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Bra006772 protein (Brassica rapa) - STRING interaction network
"Bra006772" - AT5G58330 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006772AT5G58330 (E=4e-235) | malate dehydrogenase (NADP), chloroplast, putative (444 aa)    
Predicted Functional Partners:
Bra036142
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (729 aa)
   
  0.995
Bra020639
AT5G49460 (E=0.0) ACLB-2 | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2); ATP citrate synthase (608 aa)
   
  0.992
Bra037657
AT2G44350 (E=3e-249) ATCS, CSY4 | ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase (475 aa)
   
  0.979
Bra007417
AT3G58750 (E=6e-272) CSY2 | CSY2 (citrate synthase 2); citrate (SI)-synthase (507 aa)
   
  0.979
Bra004720
AT2G42790 (E=4e-271) CSY3 | CSY3 (citrate synthase 3); citrate (SI)-synthase (510 aa)
   
  0.979
Bra003355
AT3G58750 (E=4e-257) CSY2 | CSY2 (citrate synthase 2); citrate (SI)-synthase (508 aa)
   
  0.979
Bra000351
AT2G44350 (E=9e-234) ATCS, CSY4 | ATCS; ATP binding / ATP citrate synthase/ citrate (SI)-synthase (444 aa)
   
  0.979
Bra039029
AT2G19900 (E=1e-314) ATNADP-ME1 | ATNADP-ME1 (NADP-malic enzyme 1); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor (582 aa)
   
  0.971
Bra037347
AT4G00570 (E=5e-256) | malate oxidoreductase, putative (587 aa)
   
  0.971
Bra037210
AT2G13560 (E=1e-296) | malate oxidoreductase, putative (618 aa)
   
  0.971
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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