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Bra006780 protein (Brassica rapa) - STRING interaction network
"Bra006780" - AT5G58190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006780AT5G58190 (E=1e-193) ECT10 | ECT10 (509 aa)    
Predicted Functional Partners:
Bra039486
AT5G35910 (E=2e-294) | 3’-5’ exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein (867 aa)
       
 
  0.560
Bra021790
AT2G32415 (E=0.0) | 3’-5’ exonuclease/ nucleic acid binding (863 aa)
       
 
  0.560
Bra021339
AT1G54440 (E=3e-198) | 3’-5’ exonuclease/ nucleic acid binding (590 aa)
       
 
  0.560
Bra005594
AT2G32415 (E=1e-190) | 3’-5’ exonuclease/ nucleic acid binding (892 aa)
       
 
  0.560
Bra005593
AT2G32415 (E=3e-048) | 3’-5’ exonuclease/ nucleic acid binding (115 aa)
       
 
  0.560
Bra002888
AT2G32415 (E=5e-038) | 3’-5’ exonuclease/ nucleic acid binding (454 aa)
       
 
  0.560
Bra033552
AT4G38360 (E=4e-068) | unknown protein (540 aa)
     
   
  0.454
Bra000810
AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)
       
      0.445
Bra034276
AT4G32850 (E=3e-297) nPAP | nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase/ protein binding (771 aa)
     
 
  0.444
Bra031010
AT1G17980 (E=4e-290) | nucleotidyltransferase family protein (689 aa)
     
 
  0.444
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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