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Bra006786 protein (Brassica rapa) - STRING interaction network
"Bra006786" - AT5G58040 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006786AT5G58040 (E=1e-164) ATFIP1[V] | ATFIP1[V] (Arabidopsis homolog of yeast Fip1 [V]); RNA binding / protein binding (1047 aa)    
Predicted Functional Partners:
Bra014881
AT1G30460 (E=3e-141) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (580 aa)
     
  0.999
Bra010767
AT1G30460 (E=2e-211) CPSF30, ATCPSF30 | CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding (630 aa)
     
  0.999
Bra016588
AT1G17760 (E=5e-211) CSTF77, ATCSTF77 | CSTF77; protein binding (724 aa)
     
  0.995
Bra011138
AT4G29820 (E=1e-108) CFIM-25, ATCFIM-25 | CFIM-25 (219 aa)
       
  0.994
Bra029588
AT3G06560 (E=3e-235) | polynucleotide adenylyltransferase/ protein binding (514 aa)
     
  0.994
Bra007985
AT1G71800 (E=4e-182) | cleavage stimulation factor, putative (451 aa)
     
  0.988
Bra003913
AT1G71800 (E=6e-200) | cleavage stimulation factor, putative (487 aa)
     
  0.988
Bra013899
AT4G25550 (E=9e-114) | protein binding (200 aa)
       
  0.986
Bra010457
AT4G25550 (E=4e-113) | protein binding (393 aa)
       
  0.986
Bra009712
AT5G23880 (E=0.0) EMB1265, CPSF100, ESP5, ATCPSF100 | CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100); DNA binding / protein binding (739 aa)
     
  0.986
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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