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Bra006792 protein (Brassica rapa) - STRING interaction network
"Bra006792" - AT5G57920 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra006792AT5G57920 (E=1e-058) | plastocyanin-like domain-containing protein (173 aa)    
Predicted Functional Partners:
Bra009296
AT5G07050 (E=9e-185) | LOCATED IN- membrane; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF6, transmembrane (InterPro-IPR000620); BEST Arabidopsis thaliana protein match is- nodulin MtN21 family protein (TAIR-AT2G40900.1); Has 2288 Blast hits to 2270 proteins in 280 species- Archae - 23; Bacteria - 774; Metazoa - 5; Fungi - 0; Plants - 641; Viruses - 0; Other Eukaryotes - 845 (source- NCBI BLink). (399 aa)
           
  0.526
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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