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Bra006794 protein (Brassica rapa) - STRING interaction network
"Bra006794" - AT5G57860 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006794AT5G57860 (E=3e-041) | ubiquitin family protein (93 aa)    
Predicted Functional Partners:
Bra006730
AT5G59140 (E=1e-050) | SKP1 family protein (96 aa)
     
  0.983
Bra002588
AT5G59140 (E=5e-050) | SKP1 family protein (96 aa)
     
  0.983
Bra040841
AT5G43470 (E=8e-154) RPP8, HRT, RCY1 | RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8); nucleotide binding (806 aa)
       
  0.905
Bra005270
AT5G35450 (E=8e-162) | disease resistance protein (CC-NBS-LRR class), putative (806 aa)
       
  0.905
Bra036257
AT4G02570 (E=0.0) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (986 aa)
       
  0.869
Bra034597
AT4G02570 (E=7e-295) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (731 aa)
       
  0.863
Bra033363
AT4G02570 (E=7e-264) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (778 aa)
       
  0.863
Bra033362
AT4G02570 (E=1e-256) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (716 aa)
       
  0.863
Bra032576
AT4G02570 (E=6e-295) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (738 aa)
       
  0.863
Bra032570
AT4G02570 (E=9e-090) ATCUL1, CUL1, AXR6 | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1); protein binding (696 aa)
       
  0.863
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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