STRINGSTRING
Bra006808 protein (Brassica rapa) - STRING interaction network
"Bra006808" - AT5G57685 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006808AT5G57685 (E=4e-050) AtGDU3 | AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3) (146 aa)    
Predicted Functional Partners:
Bra034086
AT3G09770 (E=3e-114) | zinc finger (C3HC4-type RING finger) family protein (371 aa)
       
 
  0.502
Bra029788
AT3G09770 (E=5e-119) | zinc finger (C3HC4-type RING finger) family protein (381 aa)
       
 
  0.502
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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