STRINGSTRING
Bra006821 protein (Brassica rapa) - STRING interaction network
"Bra006821" - AT5G57410 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006821AT5G57410 (E=2e-176) | unknown protein (363 aa)    
Predicted Functional Partners:
Bra008862
AT5G13030 (E=0.0) | unknown protein (642 aa)
           
  0.581
Bra006138
AT5G12040 (E=1e-168) | carbon-nitrogen hydrolase family protein (364 aa)
           
  0.551
Bra039905
AT2G17975 (E=5e-063) | zinc finger (Ran-binding) family protein (251 aa)
           
  0.540
Bra023311
AT5G11200 (E=4e-229) | DEAD/DEAH box helicase, putative (427 aa)
           
  0.540
Bra036169
AT5G48470 (E=4e-191) | unknown protein (396 aa)
           
  0.526
Bra023312
AT5G11200 (E=1e-198) | DEAD/DEAH box helicase, putative (436 aa)
           
  0.510
Bra009249
AT5G07590 (E=1e-271) | WD-40 repeat protein family (458 aa)
       
 
  0.506
Bra011644
AT4G35850 (E=5e-227) | pentatricopeptide (PPR) repeat-containing protein (493 aa)
           
  0.499
Bra006176
AT5G13030 (E=3e-282) | unknown protein (573 aa)
           
  0.472
Bra024278
AT5G64250 (E=4e-178) | 2-nitropropane dioxygenase family / NPD family (333 aa)
           
  0.449
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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