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Bra006827 protein (Brassica rapa) - STRING interaction network
"Bra006827" - AT5G57300 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006827AT5G57300 (E=2e-145) | UbiE/COQ5 methyltransferase family protein (290 aa)    
Predicted Functional Partners:
Bra036319
AT4G01660 (E=2e-245) ATABC1, ATATH10 | ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter (602 aa)
   
 
  0.969
Bra025711
AT1G19140 (E=2e-140) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- ubiquinone biosynthetic process; LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COQ9 (InterPro-IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro-IPR012762); Has 607 Blast hits to 607 proteins in 177 species- Archae - 0; Bacteria - 151; Metazoa - 114; Fungi - 62; Plants - 22; Viruses - 0; Other Eukaryotes - 258 (source- NCBI BLink). (301 aa)
     
 
  0.920
Bra016523
AT1G19140 (E=7e-117) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- ubiquinone biosynthetic process; LOCATED IN- mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- COQ9 (InterPro-IPR013718), Ubiquinone biosynthesis protein COQ9 (InterPro-IPR012762); Has 607 Blast hits to 607 proteins in 177 species- Archae - 0; Bacteria - 151; Metazoa - 114; Fungi - 62; Plants - 22; Viruses - 0; Other Eukaryotes - 258 (source- NCBI BLink). (297 aa)
     
 
  0.920
Bra016349
AT1G23360 (E=4e-113) | UbiE/COQ5 methyltransferase family protein (264 aa)
   
   
0.917
Bra015003
AT3G24210 (E=6e-275) | ankyrin repeat family protein (1116 aa)
   
  0.908
Bra019660
AT1G14340 (E=7e-103) | RNA recognition motif (RRM)-containing protein (244 aa)
       
      0.905
Bra016705
AT1G14340 (E=2e-100) | RNA recognition motif (RRM)-containing protein (244 aa)
       
      0.877
Bra030027
AT1G24340 (E=0.0) emb2421 | emb2421 (embryo defective 2421); monooxygenase/ oxidoreductase (709 aa)
     
  0.856
Bra009806
AT5G24970 (E=2e-271) | ABC1 family protein (1081 aa)
   
 
  0.849
Bra003601
AT1G79600 (E=0.0) | ABC1 family protein (1154 aa)
   
 
  0.804
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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