STRINGSTRING
Bra006828 protein (Brassica rapa) - STRING interaction network
"Bra006828" - AT5G57280 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006828AT5G57280 (E=8e-117) | methyltransferase (414 aa)    
Predicted Functional Partners:
Bra012027
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.939
Bra031378
AT1G22270 (E=2e-040) | unknown protein (127 aa)
     
 
  0.939
Bra012318
AT1G22270 (E=2e-049) | unknown protein (125 aa)
     
 
  0.939
Bra012027.1-P
AT1G78190 (E=8e-055) | unknown protein (121 aa)
     
 
  0.939
Bra038067
AT4G15770 (E=6e-098) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.854
Bra033510
AT4G15770 (E=1e-097) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.854
Bra012765
AT4G15770 (E=1e-099) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.854
Bra036325
AT4G01560 (E=4e-159) MEE49 | MEE49 (maternal effect embryo arrest 49) (350 aa)
     
        0.836
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
        0.828
Bra030096
AT1G31660 (E=2e-044) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Bystin (InterPro-IPR007955); Has 370 Blast hits to 362 proteins in 156 species- Archae - 0; Bacteria - 7; Metazoa - 139; Fungi - 93; Plants - 32; Viruses - 0; Other Eukaryotes - 99 (source- NCBI BLink). (244 aa)
     
      0.758
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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