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Bra006834 protein (Brassica rapa) - STRING interaction network
"Bra006834" - AT5G57090 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Cooccurence
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[Homology]
Score
Bra006834AT5G57090 (E=2e-314) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (642 aa)    
Predicted Functional Partners:
Bra009166
AT5G06140 (E=2e-206) SNX1, ATSNX1 | SNX1 (SORTING NEXIN 1); phosphoinositide binding / protein binding (390 aa)
       
 
  0.793
Bra023087
AT2G36910 (E=0.0) ATPGP1, PGP1, ABCB1 | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding (1339 aa)
       
 
  0.711
Bra039042
AT3G28860 (E=0.0) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter (1252 aa)
       
 
  0.692
Bra025359
AT3G28860 (E=0.0) ATMDR1, ATMDR11, PGP19, MDR11, MDR1, ATPGP19, ABCB19, ATABCB19 | ABCB19; ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter (1252 aa)
       
 
  0.692
Bra033942
AT1G68370 (E=3e-201) ARG1 | ARG1 (ALTERED RESPONSE TO GRAVITY 1); cytoskeletal protein binding (410 aa)
       
 
  0.684
Bra021925
AT2G34650 (E=7e-213) PID, ABR | PID (PINOID); kinase/ protein kinase/ protein serine/threonine kinase (439 aa)
       
 
  0.682
Bra005403
AT2G34650 (E=6e-214) PID, ABR | PID (PINOID); kinase/ protein kinase/ protein serine/threonine kinase (439 aa)
       
 
  0.682
Bra024636
AT1G24120 (E=2e-183) ARL1 | ARL1 (ARG1-LIKE 1); heat shock protein binding / unfolded protein binding (432 aa)
       
 
  0.675
Bra027824
AT1G59980 (E=2e-193) ATDJC39, ARL2 | ARL2 (ARG1-LIKE 2); heat shock protein binding / unfolded protein binding (414 aa)
       
 
  0.656
Bra017216
AT2G36910 (E=0.0) ATPGP1, PGP1, ABCB1 | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding (1338 aa)
       
 
  0.647
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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