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Bra006845 protein (Brassica rapa) - STRING interaction network
"Bra006845" - AT5G56920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006845AT5G56920 (E=1e-056) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Cystatin-related, plant (InterPro-IPR006525); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G56910.1); Has 27 Blast hits to 27 proteins in 2 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (225 aa)    
Predicted Functional Partners:
Bra015172
AT2G05920 (E=0.0) | subtilase family protein (763 aa)
           
  0.545
Bra010968
AT1G24560 (E=4e-010) | unknown protein (158 aa)
           
  0.545
Bra002785
AT5G56900 (E=6e-224) | CwfJ-like family protein / zinc finger (CCCH-type) family protein (604 aa)
           
  0.545
Bra035657
AT3G46330 (E=2e-253) MEE39 | MEE39 (maternal effect embryo arrest 39); kinase (1564 aa)
           
  0.479
Bra034921
AT1G43780 (E=3e-240) scpl44 | scpl44 (serine carboxypeptidase-like 44); serine-type carboxypeptidase (477 aa)
           
  0.477
Bra040939
AT5G42240 (E=9e-203) scpl42 | scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase (469 aa)
           
  0.448
Bra037202
AT5G42240 (E=9e-211) scpl42 | scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase (469 aa)
           
  0.448
Bra013152
AT5G42240 (E=5e-213) scpl42 | scpl42 (serine carboxypeptidase-like 42); serine-type carboxypeptidase (466 aa)
           
  0.448
Bra038544
AT2G18640 (E=5e-147) GGPS4 | GGPS4 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 4); farnesyltranstransferase (367 aa)
           
  0.416
Bra016878
AT2G42410 (E=3e-087) ZFP11, ATZFP11 | ZFP11 (ZINC FINGER PROTEIN 11); nucleic acid binding / transcription factor/ zinc ion binding (212 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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