STRINGSTRING
Bra006853 protein (Brassica rapa) - STRING interaction network
"Bra006853" - AT5G56840 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Bra006853AT5G56840 (E=4e-069) | DNA-binding family protein (212 aa)    
Predicted Functional Partners:
Bra033273
AT1G01260 (E=3e-236) | basic helix-loop-helix (bHLH) family protein (584 aa)
           
  0.467
Bra013055
AT2G16720 (E=1e-087) MYB7, ATMYB7, ATY49 | MYB7 (MYB DOMAIN PROTEIN 7); DNA binding / transcription factor (288 aa)
           
  0.463
Bra020399
AT5G58000 (E=5e-133) | LOCATED IN- endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s- Reticulon (InterPro-IPR003388); BEST Arabidopsis thaliana protein match is- reticulon family protein (TAIR-AT4G28430.1); Has 1047 Blast hits to 1034 proteins in 125 species- Archae - 0; Bacteria - 2; Metazoa - 715; Fungi - 46; Plants - 58; Viruses - 4; Other Eukaryotes - 222 (source- NCBI BLink). (558 aa)
           
  0.426
Bra009548
AT5G03160 (E=8e-218) ATP58IPK | ATP58IPK (ARABIDOPSIS HOMOLOG OF MAMALLIAN P58IPK); binding / heat shock protein binding (484 aa)
           
  0.426
Bra002682
AT5G58000 (E=6e-149) | LOCATED IN- endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s- Reticulon (InterPro-IPR003388); BEST Arabidopsis thaliana protein match is- reticulon family protein (TAIR-AT4G28430.1); Has 1047 Blast hits to 1034 proteins in 125 species- Archae - 0; Bacteria - 2; Metazoa - 715; Fungi - 46; Plants - 58; Viruses - 4; Other Eukaryotes - 222 (source- NCBI BLink). (580 aa)
           
  0.426
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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