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Bra006864 protein (Brassica rapa) - STRING interaction network
"Bra006864" - AT5G56630 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006864AT5G56630 (E=3e-254) PFK7 | PFK7 (PHOSPHOFRUCTOKINASE 7); 6-phosphofructokinase ; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis (485 aa)    
Predicted Functional Partners:
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
 
  0.964
Bra027452
AT5G42740 (E=6e-182) | glucose-6-phosphate isomerase, cytosolic (PGIC) (542 aa)
   
  0.953
Bra019214
AT4G24620 (E=0.0) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (613 aa)
   
  0.953
Bra013819
AT4G24620 (E=1e-314) PGI1, PGI | PGI1 (PHOSPHOGLUCOSE ISOMERASE 1); glucose-6-phosphate isomerase (616 aa)
   
  0.953
Bra004899
AT2G45330 (E=2e-090) emb1067 | emb1067 (embryo defective 1067); tRNA 2’-phosphotransferase/ transferase, transferring phosphorus-containing groups (778 aa)
     
      0.911
Bra040225
AT3G06350 (E=2e-260) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (595 aa)
     
      0.909
Bra020756
AT3G06350 (E=5e-264) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (602 aa)
     
      0.909
Bra001195
AT3G06350 (E=2e-268) EMB3004, MEE32 | MEE32 (MATERNAL EFFECT EMBRYO ARREST 32); 3-dehydroquinate dehydratase/ NADP or NADPH binding / binding / catalytic/ shikimate 5-dehydrogenase (597 aa)
     
      0.909
Bra024064
AT2G36530 (E=2e-029) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (188 aa)
   
   
  0.891
Bra023072
AT2G36530 (E=9e-250) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (444 aa)
   
   
  0.890
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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