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Bra006877 protein (Brassica rapa) - STRING interaction network
"Bra006877" - AT3G51790 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006877AT3G51790 (E=2e-110) ATG1 | ATG1 (ARABIDOPSIS TRANSMEMBRANE PROTEIN G1P-RELATED 1) (252 aa)    
Predicted Functional Partners:
Bra026154
AT1G15220 (E=2e-072) ATCCMH, CCMH | CCMH; oxidoreductase (208 aa)
 
   
  0.797
Bra016668
AT1G15220 (E=1e-072) ATCCMH, CCMH | CCMH; oxidoreductase (159 aa)
 
   
  0.797
Bra027807
AT1G63270 (E=2e-114) ATNAP10 | ATNAP10; transporter (229 aa)
 
 
  0.787
Bra004639
AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (521 aa)
   
   
  0.752
Bra000234
AT2G41680 (E=3e-246) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (511 aa)
   
   
  0.752
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
   
   
  0.713
Bra011222
AT4G30790 (E=0.0) | unknown protein (1128 aa)
       
 
  0.709
Bra024043
AT4G30790 (E=0.0) | unknown protein (1100 aa)
       
 
  0.648
Bra000810
AT4G04950 (E=4e-116) | thioredoxin family protein (476 aa)
   
   
  0.628
Bra019602
AT3G49590 (E=3e-074) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Autophagy-related protein 13 (InterPro-IPR018731); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT3G18770.1); Has 1841 Blast hits to 549 proteins in 149 species- Archae - 0; Bacteria - 58; Metazoa - 305; Fungi - 125; Plants - 73; Viruses - 5; Other Eukaryotes - 1275 (source- NCBI BLink). (563 aa)
           
  0.577
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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