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Bra006878 protein (Brassica rapa) - STRING interaction network
"Bra006878" - AT3G51800 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006878AT3G51800 (E=2e-173) ATG2 | ATG2; aminopeptidase/ metalloexopeptidase (796 aa)    
Predicted Functional Partners:
Bra024770
AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related (229 aa)
   
 
  0.990
Bra012490
AT1G25260 (E=7e-111) | acidic ribosomal protein P0-related (229 aa)
   
 
  0.990
Bra010982
AT1G25260 (E=2e-111) | acidic ribosomal protein P0-related (229 aa)
   
 
  0.990
Bra040033
AT2G03820 (E=7e-241) | nonsense-mediated mRNA decay NMD3 family protein (509 aa)
     
 
  0.984
Bra004140
AT2G03820 (E=7e-262) | nonsense-mediated mRNA decay NMD3 family protein (517 aa)
     
 
  0.984
Bra006260
AT5G14520 (E=9e-275) | pescadillo-related ; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (592 aa)
     
 
  0.983
Bra038067
AT4G15770 (E=6e-098) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.982
Bra033510
AT4G15770 (E=1e-097) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.982
Bra012765
AT4G15770 (E=1e-099) | RNA binding / protein binding ; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
 
  0.982
Bra026921
AT1G13160 (E=9e-292) | SDA1 family protein (808 aa)
     
 
  0.982
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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