STRINGSTRING
Bra006884 protein (Brassica rapa) - STRING interaction network
"Bra006884" - AT3G51940 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006884AT3G51940 (E=2e-135) | unknown protein (610 aa)    
Predicted Functional Partners:
Bra038773
AT4G36230 (E=3e-007) | unknown protein (103 aa)
           
  0.553
Bra022938
AT2G33410 (E=1e-127) | heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative (408 aa)
           
  0.553
Bra011672
AT4G36230 (E=2e-006) | unknown protein (280 aa)
           
  0.553
Bra041119
AT2G15780 (E=3e-067) | glycine-rich protein (187 aa)
           
  0.545
Bra009253
AT5G07540 (E=6e-032) GRP16, ATGRP16, ATGRP-6 | GRP16 (GLYCINE-RICH PROTEIN 16); lipid binding / nutrient reservoir (386 aa)
           
  0.541
Bra010730
AT4G38710 (E=8e-096) | glycine-rich protein (405 aa)
           
  0.533
Bra034618
AT4G33930 (E=1e-048) | glycine-rich protein (298 aa)
           
  0.483
Bra034601
AT4G33930 (E=4e-019) | glycine-rich protein (222 aa)
           
  0.483
Bra016745
AT1G13020 (E=4e-101) | eukaryotic translation initiation factor, putative (EIF4B5) (550 aa)
           
  0.478
Bra013971
AT5G17510 (E=2e-126) | unknown protein (371 aa)
           
  0.478
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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