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Bra006895 protein (Brassica rapa) - STRING interaction network
"Bra006895" - AT3G21640 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006895AT3G21640 (E=9e-194) TWD1, UCU2, FKBP42, ATFKBP42 | TWD1 (TWISTED DWARF 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase (365 aa)    
Predicted Functional Partners:
Bra023087
AT2G36910 (E=0.0) ATPGP1, PGP1, ABCB1 | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding (1339 aa)
     
 
  0.948
Bra028952
AT5G56010 (E=0.0) HSP81-3 | HSP81-3; ATP binding / unfolded protein binding (699 aa)
     
  0.898
Bra028924
AT5G56030 (E=0.0) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (699 aa)
     
  0.898
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
       
 
  0.898
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
       
 
  0.898
Bra035593
AT5G56030 (E=1e-245) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (672 aa)
     
  0.864
Bra017216
AT2G36910 (E=0.0) ATPGP1, PGP1, ABCB1 | ABCB1 (ATP BINDING CASSETTE SUBFAMILY B1); ATPase, coupled to transmembrane movement of substances / auxin efflux transmembrane transporter/ calmodulin binding (1338 aa)
     
 
  0.822
Bra040027
AT3G07770 (E=0.0) | ATP binding (804 aa)
     
  0.798
Bra035599
AT5G56030 (E=1e-179) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (563 aa)
     
  0.798
Bra029677
AT3G07770 (E=3e-154) | ATP binding (726 aa)
     
  0.798
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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