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Bra006896 protein (Brassica rapa) - STRING interaction network
"Bra006896" - AT3G52090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006896AT3G52090 (E=2e-055) ATRPB13.6, NRPB11, NRPD11, NRPE11 | NRPB11; DNA binding / DNA-directed RNA polymerase (134 aa)    
Predicted Functional Partners:
Bra028516
AT5G41940 (E=4e-111) | RabGAP/TBC domain-containing protein (400 aa)
   
  0.991
Bra031350
AT3G22320 (E=5e-105) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase (206 aa)
   
  0.990
Bra016940
AT2G41340 (E=4e-090) RPB5D | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, D); DNA binding / DNA-directed RNA polymerase (223 aa)
   
  0.990
Bra014812
AT3G54490 (E=5e-101) RPB5E | RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E); DNA binding / DNA-directed RNA polymerase (235 aa)
   
  0.990
Bra007300
AT3G57080 (E=4e-088) RPB5B, NRPE5 | NRPE5; DNA binding / DNA-directed RNA polymerase (231 aa)
   
  0.990
Bra006791
AT5G57980 (E=1e-090) RPB5C | RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C); DNA binding / DNA-directed RNA polymerase (210 aa)
   
  0.990
Bra006521
AT3G22320 (E=2e-064) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase (199 aa)
   
  0.990
Bra001864
AT3G22320 (E=7e-108) ATRPABC24.3, RPB5A, NRPB5, NRPD5 | NRPB5; DNA binding / DNA-directed RNA polymerase (206 aa)
   
  0.990
Bra039057
AT5G51940 (E=1e-057) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
     
  0.990
Bra025617
AT5G51940 (E=2e-065) NRPB6A, NRPD6A, NRPE6A | NRPB6A; DNA binding / DNA-directed RNA polymerase (144 aa)
     
  0.990
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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