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Bra006898 protein (Brassica rapa) - STRING interaction network
"Bra006898" - AT3G52105 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006898AT3G52105 (E=4e-026) | unknown protein (69 aa)    
Predicted Functional Partners:
Bra018910
AT1G51450 (E=4e-139) | SPla/RYanodine receptor (SPRY) domain-containing protein (421 aa)
     
  0.940
Bra037051
AT4G32551 (E=0.0) LUG, RON2 | LUG (LEUNIG); protein binding / protein heterodimerization/ transcription repressor (913 aa)
     
  0.939
Bra034178
AT4G03020 (E=2e-257) | transducin family protein / WD-40 repeat family protein (510 aa)
     
  0.939
Bra026751
AT1G15750 (E=0.0) WSIP1, TPL | TPL (TOPLESS); protein binding / protein homodimerization/ transcription repressor (1130 aa)
     
  0.939
Bra022896
AT2G32700 (E=0.0) LUH | WD-40 repeat family protein (1155 aa)
     
  0.939
Bra022181
AT3G16830 (E=0.0) TPR2 | TPR2 (TOPLESS-RELATED 2) (1132 aa)
     
  0.939
Bra021142
AT3G15880 (E=0.0) WSIP2, TPR4 | protein binding (1133 aa)
     
  0.939
Bra020567
AT5G27030 (E=0.0) TPR3 | TPR3 (TOPLESS-RELATED 3) (1066 aa)
     
  0.939
Bra019610
AT3G49660 (E=2e-161) | transducin family protein / WD-40 repeat family protein (317 aa)
     
  0.939
Bra018529
AT4G02730 (E=5e-169) | transducin family protein / WD-40 repeat family protein (326 aa)
     
  0.939
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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