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Bra006902 protein (Brassica rapa) - STRING interaction network
"Bra006902" - AT3G52140 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006902AT3G52140 (E=0.0) | tetratricopeptide repeat (TPR)-containing protein ; mRNA-binding protein involved in proper cytoplasmic distribution of mitochondria (1425 aa)    
Predicted Functional Partners:
Bra033707
AT5G43960 (E=3e-141) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (438 aa)
     
 
  0.763
Bra027517
AT5G43960 (E=1e-153) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (462 aa)
     
 
  0.763
Bra038318
AT1G69250 (E=2e-088) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (511 aa)
     
 
  0.762
Bra037472
AT5G48650 (E=1e-113) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (490 aa)
     
 
  0.762
Bra035946
AT5G60980 (E=5e-169) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (454 aa)
     
 
  0.762
Bra029343
AT5G60980 (E=7e-170) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (449 aa)
     
 
  0.762
Bra025122
AT2G03640 (E=4e-053) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (400 aa)
     
 
  0.762
Bra019707
AT1G13730 (E=2e-068) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (402 aa)
     
 
  0.762
Bra015105
AT3G25150 (E=1e-163) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (464 aa)
     
 
  0.762
Bra015041
AT5G60980 (E=3e-023) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (158 aa)
     
 
  0.762
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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