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Bra006904 protein (Brassica rapa) - STRING interaction network
"Bra006904" - AT3G52150 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006904AT3G52150 (E=3e-104) | RNA recognition motif (RRM)-containing protein (251 aa)    
Predicted Functional Partners:
Bra005134
AT2G38140 (E=2e-030) PSRP4 | PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome (119 aa)
     
   
  0.547
Bra003841
AT1G73530 (E=1e-057) | RNA recognition motif (RRM)-containing protein (257 aa)
   
        0.543
Bra015926
AT1G74230 (E=2e-078) GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding (285 aa)
   
          0.526
Bra014000
AT4G13850 (E=3e-051) ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding (222 aa)
   
          0.526
Bra008142
AT1G74230 (E=2e-055) GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding (264 aa)
   
          0.526
Bra005798
AT5G04280 (E=6e-101) | glycine-rich RNA-binding protein (306 aa)
   
          0.525
Bra008020
AT1G74230 (E=1e-036) GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding (208 aa)
   
          0.521
Bra013440
AT4G20030 (E=8e-070) | RNA recognition motif (RRM)-containing protein (152 aa)
   
          0.520
Bra004508
AT2G46780 (E=1e-107) | RNA binding / nucleic acid binding / nucleotide binding (312 aa)
   
          0.516
Bra040485
AT2G46780 (E=7e-078) | RNA binding / nucleic acid binding / nucleotide binding (326 aa)
   
          0.515
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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