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Bra006909 protein (Brassica rapa) - STRING interaction network
"Bra006909" - AT3G52190 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006909AT3G52190 (E=2e-214) PHF1 | PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1); nucleotide binding (397 aa)    
Predicted Functional Partners:
Bra036294
AT4G02080 (E=4e-094) ASAR1, ATSARA1C, ATSAR2 | ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding (408 aa)
       
  0.910
Bra000895
AT4G02080 (E=1e-094) ASAR1, ATSARA1C, ATSAR2 | ATSAR2 (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 2); GTP binding (193 aa)
       
  0.910
Bra024885
AT5G50550 (E=4e-137) | WD-40 repeat family protein / St12p protein, putative (373 aa)
         
0.832
Bra026663
AT2G01470 (E=6e-151) STL2P, ATSEC12 | STL2P (SEC12P-LIKE 2 PROTEIN); nucleotide binding (398 aa)
         
0.832
Bra030763
AT1G09210 (E=2e-193) | calreticulin 2 (CRT2) (660 aa)
       
  0.791
Bra038169
AT1G56330 (E=4e-081) SAR1, ATSAR1, ATSARA1B, ATSAR1B | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B); GTP binding (195 aa)
       
  0.786
Bra027937
AT1G56330 (E=9e-081) SAR1, ATSAR1, ATSARA1B, ATSAR1B | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B); GTP binding (195 aa)
       
  0.786
Bra018576
AT1G56330 (E=1e-084) SAR1, ATSAR1, ATSARA1B, ATSAR1B | ATSAR1B (SECRETION-ASSOCIATED RAS 1 B); GTP binding (193 aa)
       
  0.786
Bra032848
AT5G05760 (E=1e-019) SYP31, ATSED5, ATSYP31, SED5 | SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor (108 aa)
     
 
  0.729
Bra028370
AT3G24350 (E=5e-101) SYP32, ATSYP32 | SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor (297 aa)
     
 
  0.729
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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