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Bra006916 protein (Brassica rapa) - STRING interaction network
"Bra006916" - AT1G75510 in Brassica rapa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
Bra006916AT1G75510 (E=2e-049) | transcription initiation factor IIF beta subunit (TFIIF-beta) family protein (396 aa)    
Predicted Functional Partners:
Bra028496
AT5G41370 (E=0.0) XPB1, ATXPB1 | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding (764 aa)
     
  0.995
Bra025503
AT5G41370 (E=0.0) XPB1, ATXPB1 | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / helicase/ hydrolase/ nucleic acid binding (767 aa)
     
  0.995
Bra040106
AT4G17020 (E=2e-242) | transcription factor-related (452 aa)
       
  0.993
Bra030524
AT1G03190 (E=0.0) ATXPD, UVH6 | UVH6 (ULTRAVIOLET HYPERSENSITIVE 6); ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ DNA binding / hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding (1027 aa)
     
  0.993
Bra029465
AT4G12610 (E=4e-099) RAP74, ATRAP74 | transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein (496 aa)
     
  0.992
Bra016558
AT1G18360 (E=6e-149) | hydrolase, alpha/beta fold family protein (392 aa)
     
  0.992
Bra016774
AT1G12340 (E=9e-055) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- intracellular signaling cascade; LOCATED IN- membrane; EXPRESSED IN- male gametophyte, pollen tube; EXPRESSED DURING- L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s- Cornichon (InterPro-IPR003377); BEST Arabidopsis thaliana protein match is- cornichon family protein (TAIR-AT1G12390.1); Has 463 Blast hits to 463 proteins in 125 species- Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source- NCBI BLink). (173 aa)
       
    0.992
Bra025913
AT1G18340 (E=4e-106) | basal transcription factor complex subunit-related (268 aa)
     
  0.992
Bra019763
AT1G12400 (E=1e-032) | DNA binding (70 aa)
       
    0.992
Bra039839
AT2G15430 (E=5e-166) RBP36A, RPB35.5A, NRPB3, NRPD3, NRPE3A | NRPB3; DNA binding / DNA-directed RNA polymerase/ protein dimerization (321 aa)
     
  0.987
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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