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Bra006918 protein (Brassica rapa) - STRING interaction network
"Bra006918" - AT3G52300 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006918AT3G52300 (E=2e-080) ATPQ | ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL); hydrogen ion transmembrane transporter (168 aa)    
Predicted Functional Partners:
Bra018503
AT4G04640 (E=2e-150) ATPC1 | ATPC1; enzyme regulator (504 aa)
     
  0.999
Bra022912
AT3G11380 (E=8e-041) | pentatricopeptide (PPR) repeat-containing protein (879 aa)
     
  0.999
Bra024969
AT5G47030 (E=4e-099) | ATP synthase delta’ chain, mitochondrial (203 aa)
     
  0.999
Bra022092
AT5G47030 (E=9e-098) | ATP synthase delta’ chain, mitochondrial (200 aa)
     
  0.999
Bra017512
AT5G47030 (E=2e-093) | ATP synthase delta’ chain, mitochondrial (203 aa)
     
  0.999
Bra038377
AT4G09650 (E=5e-106) ATPD | ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE); hydrogen ion transporting ATP synthase, rotational mechanism / proton-transporting ATPase, rotational mechanism (234 aa)
     
  0.999
Bra023413
AT5G13450 (E=4e-111) | ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative (240 aa)
     
  0.999
Bra012341
AT4G09650 (E=3e-057) ATPD | ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE); hydrogen ion transporting ATP synthase, rotational mechanism / proton-transporting ATPase, rotational mechanism (183 aa)
     
  0.999
Bra008829
AT5G13450 (E=7e-103) | ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative (244 aa)
     
  0.999
Bra006200
AT5G13450 (E=8e-107) | ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative (244 aa)
     
  0.999
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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