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Bra006922 protein (Brassica rapa) - STRING interaction network
"Bra006922" - AT3G52430 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006922AT3G52430 (E=8e-195) PAD4, ATPAD4 | PAD4 (PHYTOALEXIN DEFICIENT 4); lipase/ protein binding / triacylglycerol lipase (547 aa)    
Predicted Functional Partners:
Bra033775
AT3G48090 (E=3e-194) EDS1 | EDS1 (enhanced disease susceptibility 1); lipase/ signal transducer/ triacylglycerol lipase (600 aa)
     
 
0.702
Bra018085
AT3G48080 (E=1e-188) | lipase class 3 family protein / disease resistance protein-related (600 aa)
     
 
0.702
Bra033774
AT3G48080 (E=1e-185) | lipase class 3 family protein / disease resistance protein-related (592 aa)
     
 
0.701
Bra008165
AT1G74710 (E=6e-286) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (564 aa)
     
   
  0.635
Bra003789
AT1G74710 (E=2e-264) EDS16, ICS1, SID2 | isochorismate synthase 1 (ICS1) / isochorismate mutase (567 aa)
     
   
  0.635
Bra027690
AT1G64280 (E=2e-195) NPR1, SAI1, NIM1, ATNPR1 | NPR1 (NONEXPRESSER OF PR GENES 1); protein binding / transcription activator (570 aa)
     
   
  0.617
Bra011880
AT4G39030 (E=6e-259) EDS5, SID1 | EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5); antiporter/ multidrug efflux pump/ transporter (538 aa)
     
   
  0.615
Bra023940
AT3G20600 (E=7e-091) NDR1 | NDR1 (non race-specific disease resistance 1); signal transducer (212 aa)
           
  0.549
Bra001796
AT3G20600 (E=2e-091) NDR1 | NDR1 (non race-specific disease resistance 1); signal transducer (211 aa)
           
  0.549
Bra007315
AT3G57260 (E=1e-128) BGL2, PR2, BG2, PR-2 | BGL2 (BETA-1,3-GLUCANASE 2); cellulase/ glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds (329 aa)
     
   
  0.536
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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