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Bra006925 protein (Brassica rapa) - STRING interaction network
"Bra006925" - AT3G52450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006925AT3G52450 (E=5e-211) PUB22 | PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase (435 aa)    
Predicted Functional Partners:
Bra015543
AT1G07000 (E=3e-274) ATEXO70B2 | ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding (597 aa)
     
 
  0.815
Bra000158
AT2G40000 (E=2e-191) HSPRO2, ATHSPRO2 | HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) (424 aa)
     
      0.624
Bra031898
AT5G64840 (E=2e-294) ATGCN5 | ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5); transporter (687 aa)
       
      0.615
Bra027017
AT1G62780 (E=2e-105) | unknown protein (236 aa)
       
      0.615
Bra015663
AT1G77580 (E=7e-221) | myosin heavy chain-related (758 aa)
       
      0.615
Bra011046
AT4G28650 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (1016 aa)
       
      0.615
Bra009364
AT5G08720 (E=0.0) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- mitochondrion; CONTAINS InterPro DOMAIN/s- Streptomyces cyclase/dehydrase (InterPro-IPR005031); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G01650.2); Has 578 Blast hits to 324 proteins in 67 species- Archae - 1; Bacteria - 248; Metazoa - 1; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 269 (source- NCBI BLink). (724 aa)
       
      0.615
Bra003757
AT1G75370 (E=3e-242) | SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative (632 aa)
       
      0.615
Bra040915
AT1G64520 (E=9e-131) RPN12a | RPN12a (Regulatory Particle non-ATPase 12a); peptidase (267 aa)
       
 
  0.559
Bra027705
AT1G64520 (E=8e-130) RPN12a | RPN12a (Regulatory Particle non-ATPase 12a); peptidase (267 aa)
       
 
  0.559
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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