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Bra006928 protein (Brassica rapa) - STRING interaction network
"Bra006928" - AT3G52480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006928AT3G52480 (E=5e-078) | unknown protein (209 aa)    
Predicted Functional Partners:
Bra026334
AT4G27610 (E=4e-150) | unknown protein (333 aa)
           
  0.541
Bra037816
AT5G65410 (E=7e-095) ATHB25, ZFHD2, HB25 | HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator (242 aa)
           
  0.513
Bra031859
AT5G65410 (E=7e-094) ATHB25, ZFHD2, HB25 | HB25 (HOMEOBOX PROTEIN 25); DNA binding / sequence-specific DNA binding / transcription factor/ transcription regulator (272 aa)
           
  0.513
Bra026331
AT4G27620 (E=5e-137) | unknown protein (319 aa)
           
  0.511
Bra033755
AT5G44620 (E=2e-111) CYP706A3 | CYP706A3; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (458 aa)
           
  0.502
Bra031536
AT1G06750 (E=2e-254) | unknown protein (497 aa)
           
  0.499
Bra027510
AT5G11250 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1307 aa)
           
  0.483
Bra006556
AT5G11250 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1235 aa)
           
  0.483
Bra006094
AT5G11250 (E=0.0) | disease resistance protein (TIR-NBS-LRR class), putative (1184 aa)
           
  0.483
Bra016907
AT1G58260 (E=5e-227) CYP79C2, CYP79C3P | CYP79C2 (CYTOCHROME P450 79C2); electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (527 aa)
           
  0.481
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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