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Bra006949 protein (Brassica rapa) - STRING interaction network
"Bra006949" - AT3G52800 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006949AT3G52800 (E=2e-075) | zinc finger (AN1-like) family protein (176 aa)    
Predicted Functional Partners:
Bra024598
AT1G23410 (E=2e-021) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (210 aa)
       
    0.887
Bra016346
AT1G23410 (E=6e-029) | ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) (84 aa)
       
    0.887
Bra027593
AT5G45130 (E=7e-105) ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RHA1 (RAB HOMOLOG 1); GTP binding (199 aa)
       
 
  0.647
Bra025091
AT5G45130 (E=2e-104) ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A | RHA1 (RAB HOMOLOG 1); GTP binding (200 aa)
       
 
  0.647
Bra014785
AT3G54840 (E=4e-100) ARA6, ATRABF1, ARA-6, ATRAB5C | ARA6; GTP binding / GTPase (199 aa)
       
 
  0.647
Bra013410
AT4G19640 (E=1e-105) ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | ARA7; GTP binding (200 aa)
       
 
  0.647
Bra007104
AT3G54840 (E=1e-100) ARA6, ATRABF1, ARA-6, ATRAB5C | ARA6; GTP binding / GTPase (278 aa)
       
 
  0.647
Bra028860
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1443 aa)
     
 
    0.608
Bra010737
AT4G38600 (E=0.0) KAK, UPL3 | KAK (KAKTUS); ubiquitin-protein ligase (1888 aa)
     
 
    0.608
Bra005748
AT5G02880 (E=0.0) UPL4 | UPL4; ubiquitin-protein ligase (1349 aa)
     
 
    0.608
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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