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Bra006952 protein (Brassica rapa) - STRING interaction network
"Bra006952" - AT3G52850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006952AT3G52850 (E=2e-292) VSR1, BP-80, ATELP, VSR-1, BP80, BP80B, ATELP1, ATVSR1 | VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1); amino-terminal vacuolar sorting propeptide binding (639 aa)    
Predicted Functional Partners:
Bra020255
AT5G60360 (E=2e-171) SAG2, AALP | AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase (359 aa)
       
 
  0.819
Bra002485
AT5G60360 (E=1e-190) SAG2, AALP | AALP (Arabidopsis aleurain-like protease); cysteine-type peptidase (359 aa)
       
 
  0.819
Bra008294
AT1G77140 (E=4e-308) VPS45, ATVPS45 | VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter (569 aa)
       
 
  0.813
Bra023337
AT5G11710 (E=2e-217) | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (557 aa)
       
 
  0.739
Bra008592
AT5G16830 (E=1e-096) SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor (279 aa)
       
 
  0.728
Bra006372
AT5G16830 (E=3e-072) SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor (276 aa)
       
 
  0.728
Bra024989
AT5G46860 (E=7e-116) VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | VAM3; SNAP receptor (270 aa)
       
 
  0.568
Bra022073
AT5G46860 (E=3e-124) VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | VAM3; SNAP receptor (267 aa)
       
 
  0.568
Bra012055
AT5G66160 (E=9e-108) RMR1 | JR700; peptidase/ protein binding / zinc ion binding (281 aa)
           
  0.551
Bra013410
AT4G19640 (E=1e-105) ARA7, ARA-7, ATRABF2B, ATRAB5B, RABF2B, ATRAB-F2B, RAB-F2B | ARA7; GTP binding (200 aa)
           
  0.541
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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