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Bra006956 protein (Brassica rapa) - STRING interaction network
"Bra006956" - AT3G52910 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006956AT3G52910 (E=2e-124) AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR 4); transcription activator (382 aa)    
Predicted Functional Partners:
Bra019474
AT3G45780 (E=0.0) PHOT1, NPH1, JK224, RPT1 | PHOT1 (PHOTOTROPIN 1); FMN binding / blue light photoreceptor/ kinase/ protein binding / protein serine/threonine kinase (963 aa)
       
      0.620
Bra012495
AT1G24650 (E=2e-315) | leucine-rich repeat family protein / protein kinase family protein (889 aa)
     
   
  0.497
Bra017267
AT2G36020 (E=2e-120) HVA22J | HVA22J (HVA22-LIKE PROTEIN J) (257 aa)
           
  0.414
Bra034654
AT4G34780 (E=3e-040) | auxin-responsive family protein (106 aa)
           
  0.414
Bra024678
AT1G26850 (E=0.0) | dehydration-responsive family protein (614 aa)
           
  0.414
Bra012437
AT1G26850 (E=0.0) | dehydration-responsive family protein (614 aa)
           
  0.414
Bra028921
AT5G56510 (E=2e-222) APUM12 | APUM12 (ARABIDOPSIS PUMILIO 12); RNA binding / binding (575 aa)
           
  0.406
Bra021838
AT2G33270 (E=4e-109) ACHT3 | ACHT3 (ATYPICAL CYS HIS RICH THIOREDOXIN 3) (272 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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