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Bra006970 protein (Brassica rapa) - STRING interaction network
"Bra006970" - AT3G53030 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006970AT3G53030 (E=5e-117) SRPK4 | SRPK4 (Ser/Arg-rich protein kinase 4); kinase/ protein kinase (617 aa)    
Predicted Functional Partners:
Bra007633
AT2G46620 (E=2e-216) | AAA-type ATPase family protein (708 aa)
     
  0.975
Bra029146
AT5G52040 (E=1e-106) ATRSP41 | ATRSP41; RNA binding / nucleic acid binding / nucleotide binding (418 aa)
     
  0.974
Bra013895
AT4G25500 (E=4e-111) ATRSP35, ATRSP40, AT-SRP40, RSP35 | ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (339 aa)
     
  0.974
Bra010459
AT4G25500 (E=9e-143) ATRSP35, ATRSP40, AT-SRP40, RSP35 | ATRSP35; RNA binding / nucleic acid binding / nucleotide binding (348 aa)
     
  0.974
Bra004523
AT2G46610 (E=5e-094) | arginine/serine-rich splicing factor, putative (246 aa)
     
  0.974
Bra019919
AT1G10580 (E=1e-303) | transducin family protein / WD-40 repeat family protein (565 aa)
     
 
  0.914
Bra030798
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (847 aa)
     
      0.908
Bra027160
AT1G09770 (E=4e-100) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (236 aa)
     
      0.908
Bra019993
AT1G09770 (E=0.0) ATCDC5, CDC5, ATMYBCDC5 | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5); DNA binding / transcription factor (844 aa)
     
      0.908
Bra038786
AT4G21110 (E=2e-085) | G10 family protein (145 aa)
     
 
  0.906
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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