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Bra006978 protein (Brassica rapa) - STRING interaction network
"Bra006978" - AT3G53230 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006978AT3G53230 (E=0.0) | cell division cycle protein 48, putative / CDC48, putative (811 aa)    
Predicted Functional Partners:
Bra038084
AT4G15420 (E=3e-280) | PRLI-interacting factor K (560 aa)
     
  0.979
Bra035652
AT2G29070 (E=2e-148) | ubiquitin fusion degradation UFD1 family protein (308 aa)
     
  0.978
Bra030307
AT2G21270 (E=9e-137) | ubiquitin fusion degradation UFD1 family protein (321 aa)
     
  0.978
Bra037466
AT5G48690 (E=2e-119) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro-IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro-IPR015940), PUG (InterPro-IPR006567), UBA-like (InterPro-IPR009060); BEST Arabidopsis thaliana protein match is- ubiquitin-associated (UBA)/TS-N domain-containing protein (TAIR-AT1G04850.1); Has 6741 Blast hits to 4773 proteins in 362 spec [...] (413 aa)
       
  0.977
Bra040419
AT3G63000 (E=7e-209) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (413 aa)
     
  0.977
Bra003519
AT3G63000 (E=2e-024) NPL41 | NPL41 (NPL4-LIKE PROTEIN 1) (89 aa)
     
  0.977
Bra038085
AT4G15410 (E=9e-118) PUX5 | PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (374 aa)
     
  0.974
Bra030275
AT4G15410 (E=1e-023) PUX5 | PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (296 aa)
     
  0.974
Bra030225
AT4G15410 (E=5e-025) PUX5 | PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (295 aa)
     
  0.974
Bra030224
AT4G15410 (E=4e-025) PUX5 | PUX5 (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma); protein binding (289 aa)
     
  0.974
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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