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Bra006985 protein (Brassica rapa) - STRING interaction network
"Bra006985" - AT3G53260 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006985AT3G53260 (E=0.0) PAL2, ATPAL2 | PAL2; phenylalanine ammonia-lyase (706 aa)    
Predicted Functional Partners:
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
       
  0.728
Bra031140
AT2G20830 (E=5e-136) | folic acid binding / transferase (295 aa)
 
     
  0.678
Bra036506
AT2G20830 (E=7e-101) | folic acid binding / transferase (312 aa)
 
     
  0.661
Bra000659
AT4G08900 (E=4e-178) | arginase (341 aa)
   
 
  0.641
Bra014459
AT2G45570 (E=6e-071) CYP76C2 | CYP76C2; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (453 aa)
     
 
  0.626
Bra040821
AT3G26300 (E=8e-237) CYP71B34 | CYP71B34; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (502 aa)
     
 
  0.614
Bra040819
AT3G26330 (E=3e-221) CYP71B37 | CYP71B37; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (497 aa)
     
 
  0.614
Bra040720
AT1G13710 (E=3e-267) CYP78A5 | CYP78A5; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (516 aa)
     
 
  0.614
Bra040154
AT5G35917 (E=5e-018) CYP79A3P | CYP79A3P; electron carrier/ heme binding / iron ion binding / monooxygenase (53 aa)
     
 
  0.614
Bra039930
AT2G14100 (E=5e-164) CYP705A13 | CYP705A13; electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding (498 aa)
     
 
  0.614
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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