STRINGSTRING
Bra006990 protein (Brassica rapa) - STRING interaction network
"Bra006990" - AT3G53320 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006990AT3G53320 (E=7e-165) | unknown protein (541 aa)    
Predicted Functional Partners:
Bra000164
AT2G40070 (E=2e-222) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 7 growth stages; BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species- Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source- NCBI BLink). (609 aa)
     
   
  0.509
Bra004992
AT2G40070 (E=1e-122) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 17 plant structures; EXPRESSED DURING- 7 growth stages; BEST Arabidopsis thaliana protein match is- proline-rich family protein (TAIR-AT3G09000.1); Has 94255 Blast hits to 49644 proteins in 1573 species- Archae - 225; Bacteria - 11215; Metazoa - 37735; Fungi - 21320; Plants - 3339; Viruses - 2662; Other Eukaryotes - 17759 (source- NCBI BLink). (589 aa)
     
   
  0.489
Bra010090
AT5G62500 (E=3e-125) ATEB1B, ATEB1, EB1B | ATEB1B (END BINDING PROTEIN 1B); microtubule binding (283 aa)
           
  0.473
Bra014719
AT3G55850 (E=3e-303) LAF3, LAF3 ISF2 | LAF3 (LONG AFTER FAR-RED 3); hydrolase/ hydrolase, acting on carbon-nitrogen (but not peptide) bonds (576 aa)
           
  0.426
Bra034198
AT4G03270 (E=1e-112) CYCD6;1 | CYCD6;1 (Cyclin D6;1); cyclin-dependent protein kinase (298 aa)
           
  0.422
Bra012147
AT5G67270 (E=2e-109) ATEB1C, EB1C, ATEB1H1 | ATEB1C (microtubule end binding protein 1); microtubule binding (366 aa)
           
  0.410
Bra008719
AT5G15130 (E=6e-198) WRKY72, ATWRKY72 | WRKY72; transcription factor (551 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (15%) [HD]