STRINGSTRING
Bra006991 protein (Brassica rapa) - STRING interaction network
"Bra006991" - AT3G53340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006991AT3G53340 (E=3e-051) NF-YB10 | NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10); transcription factor (178 aa)    
Predicted Functional Partners:
Bra003334
AT1G56170 (E=9e-069) HAP5B, ATHAP5B, NF-YC2 | NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor (184 aa)
     
  0.979
Bra038636
AT5G63470 (E=4e-084) NF-YC4 | NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor (272 aa)
     
  0.978
Bra018046
AT3G48590 (E=6e-079) HAP5A, ATHAP5A, NF-YC1 | NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor (221 aa)
     
  0.978
Bra033668
AT5G43250 (E=7e-049) NF-YC13 | NF-YC13 (NUCLEAR FACTOR Y, SUBUNIT C13); DNA binding / transcription factor (130 aa)
     
  0.975
Bra031651
AT1G08970 (E=4e-083) HAP5C, NF-YC9 | NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (228 aa)
     
  0.975
Bra031606
AT1G07980 (E=2e-048) NF-YC10 | NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10); transcription factor (182 aa)
     
  0.975
Bra030749
AT1G08970 (E=2e-086) HAP5C, NF-YC9 | NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (218 aa)
     
  0.975
Bra018668
AT1G07980 (E=6e-047) NF-YC10 | NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10); transcription factor (177 aa)
     
  0.975
Bra018589
AT1G08970 (E=3e-068) HAP5C, NF-YC9 | NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9); DNA binding / transcription factor (220 aa)
     
  0.975
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.975
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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