STRINGSTRING
Bra006992 protein (Brassica rapa) - STRING interaction network
"Bra006992" - AT3G53350 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra006992AT3G53350 (E=1e-123) | myosin heavy chain-related (368 aa)    
Predicted Functional Partners:
Bra021186
AT3G16630 (E=0.0) ATKINESIN-13A, KINESIN-13A | KINESIN-13A; ATP binding / microtubule motor (788 aa)
       
 
  0.950
Bra029240
AT5G62880 (E=2e-109) ARAC10, ATRAC10, ATROP11 | ARAC10; GTP binding (215 aa)
       
 
  0.836
Bra010128
AT5G62880 (E=5e-107) ARAC10, ATRAC10, ATROP11 | ARAC10; GTP binding (208 aa)
       
 
  0.836
Bra022171
AT3G16630 (E=0.0) ATKINESIN-13A, KINESIN-13A | KINESIN-13A; ATP binding / microtubule motor (846 aa)
       
 
  0.829
Bra012755
AT3G16630 (E=0.0) ATKINESIN-13A, KINESIN-13A | KINESIN-13A; ATP binding / microtubule motor (823 aa)
       
 
  0.829
Bra027194
AT3G16060 (E=0.0) | kinesin motor family protein (689 aa)
       
 
  0.778
Bra023192
AT3G16060 (E=1e-227) | kinesin motor family protein (657 aa)
       
 
  0.778
Bra021158
AT3G16060 (E=0.0) | kinesin motor family protein (678 aa)
       
 
  0.778
Bra021139
AT3G16060 (E=5e-034) | kinesin motor family protein (263 aa)
       
 
  0.703
Bra001624
AT1G52300 (E=6e-049) | 60S ribosomal protein L37 (RPL37B) (273 aa)
       
 
  0.703
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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