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Bra007013 protein (Brassica rapa) - STRING interaction network
"Bra007013" - AT3G53580 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007013AT3G53580 (E=4e-170) | diaminopimelate epimerase family protein (365 aa)    
Predicted Functional Partners:
Bra011461
AT4G33680 (E=2e-237) AGD2 | AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase (459 aa)
 
 
  0.970
Bra008931
AT5G11880 (E=7e-254) | diaminopimelate decarboxylase, putative / DAP carboxylase, putative (486 aa)
   
 
  0.965
Bra006124
AT3G14390 (E=3e-244) | diaminopimelate decarboxylase, putative / DAP carboxylase, putative (493 aa)
   
 
  0.965
Bra013138
AT2G13810 (E=2e-154) ALD1 | ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (404 aa)
 
   
  0.955
Bra034580
AT4G33680 (E=1e-233) AGD2 | AGD2 (ABERRANT GROWTH AND DEATH 2); L,L-diaminopimelate aminotransferase/ transaminase (756 aa)
 
   
  0.832
Bra013137
AT2G13810 (E=5e-180) ALD1 | ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1); catalytic/ pyridoxal phosphate binding / transaminase/ transferase, transferring nitrogenous groups (367 aa)
 
   
  0.831
Bra023169
AT1G31230 (E=0.0) AK-HSDH I, AK-HSDH | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase (909 aa)
       
  0.828
Bra013425
AT4G19710 (E=0.0) AK-HSDH II, AK-HSDH | bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putative (923 aa)
       
  0.828
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
       
  0.808
Bra038537
AT2G22250 (E=6e-231) ATAAT, AAT, MEE17 | aminotransferase class I and II family protein (476 aa)
       
  0.778
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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