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Bra007014 protein (Brassica rapa) - STRING interaction network
"Bra007014" - AT4G31180 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007014AT4G31180 (E=3e-062) | aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative (176 aa)    
Predicted Functional Partners:
Bra040811
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (802 aa)
   
  0.997
Bra032735
AT4G13780 (E=0.0) | methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (792 aa)
   
  0.997
Bra026410
AT5G26710 (E=3e-314) | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative (1319 aa)
   
  0.966
Bra024759
AT1G25350 (E=2e-197) OVA9 | OVA9 (ovule abortion 9); glutamine-tRNA ligase (727 aa)
   
  0.963
Bra036585
AT5G26710 (E=0.0) | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative (721 aa)
   
  0.963
Bra020529
AT5G26710 (E=0.0) | glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative (721 aa)
   
  0.963
Bra009906
AT3G05920 (E=1e-024) | heavy-metal-associated domain-containing protein (334 aa)
     
  0.963
Bra025459
AT4G10320 (E=0.0) | isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (1175 aa)
   
  0.961
Bra019389
AT4G10320 (E=0.0) | isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative (1097 aa)
   
  0.961
Bra007498
AT3G59980 (E=6e-107) | tRNA-binding region domain-containing protein (270 aa)
   
  0.937
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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