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Bra007016 protein (Brassica rapa) - STRING interaction network
"Bra007016" - AT3G53620 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007016AT3G53620 (E=5e-116) AtPPa4 | AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4); inorganic diphosphatase (217 aa)    
Predicted Functional Partners:
Bra011352
AT2G25610 (E=2e-075) | H+-transporting two-sector ATPase, C subunit family protein (177 aa)
     
  0.936
Bra022912
AT3G11380 (E=8e-041) | pentatricopeptide (PPR) repeat-containing protein (879 aa)
     
 
  0.936
Bra041120
ATCG00120 (E=1e-229) ATPA | Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. ; Produces ATP from ADP in the presence of a proton gradient across the membrane (504 aa)
     
 
  0.924
Bra029511
AT4G04640 (E=2e-165) ATPC1 | ATPC1; enzyme regulator (375 aa)
     
 
  0.918
Bra022908
AT2G33040 (E=2e-172) | ATP synthase gamma chain, mitochondrial (ATPC) (325 aa)
     
 
  0.918
Bra021826
AT2G33040 (E=1e-167) | ATP synthase gamma chain, mitochondrial (ATPC) (321 aa)
     
 
  0.918
Bra005531
AT2G33040 (E=2e-162) | ATP synthase gamma chain, mitochondrial (ATPC) (325 aa)
     
 
  0.918
Bra000802
AT4G04640 (E=4e-157) ATPC1 | ATPC1; enzyme regulator (374 aa)
     
 
  0.918
Bra028649
AT5G08680 (E=6e-268) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (564 aa)
     
 
  0.915
Bra028648
AT5G08680 (E=7e-263) | ATP synthase beta chain, mitochondrial, putative ; Produces ATP from ADP in the presence of a proton gradient across the membrane (555 aa)
     
 
  0.915
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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