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Bra007022 protein (Brassica rapa) - STRING interaction network
"Bra007022" - AT3G53720 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007022AT3G53720 (E=8e-116) ATCHX20, CHX20 | ATCHX20 (CATION/H+ EXCHANGER 20); monovalent cation-proton antiporter/ sodium-hydrogen antiporter (259 aa)    
Predicted Functional Partners:
Bra014799
AT3G54690 (E=9e-167) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (338 aa)
         
  0.760
Bra003192
AT3G54690 (E=2e-174) | sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein (347 aa)
         
  0.760
Bra003601
AT1G79600 (E=0.0) | ABC1 family protein (1154 aa)
     
 
  0.566
Bra027370
AT3G14150 (E=2e-166) | (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative (1001 aa)
         
  0.554
Bra039469
AT3G05030 (E=5e-261) NHX2, ATNHX2 | NHX2 (SODIUM HYDROGEN EXCHANGER 2); sodium ion transmembrane transporter/ sodium-hydrogen antiporter (546 aa)
     
 
  0.550
Bra036110
AT5G27150 (E=4e-271) NHX1, ATNHX, AT-NHX1, ATNHX1 | NHX1 (NA+/H+ EXCHANGER); protein binding / sodium ion transmembrane transporter/ sodium-hydrogen antiporter (543 aa)
     
 
  0.550
Bra035130
AT1G79610 (E=2e-110) ATNHX6, NHX6 | sodium proton exchanger, putative (NHX6) (511 aa)
     
 
  0.550
Bra026197
AT1G14660 (E=0.0) ATNHX8, NHX8 | ATNHX8; lithium-hydrogen antiporter/ sodium ion transmembrane transporter/ sodium-hydrogen antiporter (743 aa)
     
 
  0.550
Bra020755
AT3G06370 (E=2e-114) NHX4, ATNHX4 | NHX4 (SODIUM HYDROGEN EXCHANGER 4); sodium ion transmembrane transporter/ sodium-hydrogen antiporter (540 aa)
     
 
  0.550
Bra020599
AT5G27150 (E=2e-220) NHX1, ATNHX, AT-NHX1, ATNHX1 | NHX1 (NA+/H+ EXCHANGER); protein binding / sodium ion transmembrane transporter/ sodium-hydrogen antiporter (513 aa)
     
 
  0.550
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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