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Bra007044 protein (Brassica rapa) - STRING interaction network
"Bra007044" - AT3G54090 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007044AT3G54090 (E=2e-202) | pfkB-type carbohydrate kinase family protein (378 aa)    
Predicted Functional Partners:
Bra027795
AT1G63660 (E=6e-286) | GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (530 aa)
   
  0.934
Bra025920
AT1G18270 (E=0.0) | ketose-bisphosphate aldolase class-II family protein (1340 aa)
   
 
  0.932
Bra036771
AT1G36160 (E=0.0) ACC1, AT-ACC1, EMB22, GK, PAS3 | ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase (2233 aa)
   
   
  0.773
Bra018702
AT1G36180 (E=0.0) ACC2 | ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase (2310 aa)
   
   
  0.773
Bra014626
AT2G48020 (E=6e-036) | sugar transporter, putative (141 aa)
       
  0.763
Bra040287
AT3G06730 (E=3e-087) | thioredoxin family protein (180 aa)
   
 
  0.759
Bra008926
AT5G11920 (E=3e-238) AtcwINV6 | AtcwINV6 (6-&1-fructan exohydrolase); hydrolase, hydrolyzing O-glycosyl compounds / inulinase/ levanase (515 aa)
 
   
  0.715
Bra027030
AT1G62660 (E=0.0) | beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar (654 aa)
 
   
  0.713
Bra036653
AT1G62660 (E=0.0) | beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar (655 aa)
 
   
  0.712
Bra027397
AT3G13790 (E=0.0) ATCWINV1, ATBFRUCT1 | ATBFRUCT1; beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds (580 aa)
 
   
  0.712
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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