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Bra007047 protein (Brassica rapa) - STRING interaction network
"Bra007047" - AT3G54120 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007047AT3G54120 (E=1e-077) | reticulon family protein (RTNLB12) (205 aa)    
Predicted Functional Partners:
Bra018954
AT1G52220 (E=4e-043) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast thylakoid membrane, chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR-AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species- Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source- NCBI BLink). (145 aa)
       
      0.898
Bra020367
AT5G58460 (E=0.0) ATCHX25, CHX25 | ATCHX25; monovalent cation-proton antiporter/ sodium-hydrogen antiporter (921 aa)
       
      0.822
Bra009166
AT5G06140 (E=2e-206) SNX1, ATSNX1 | SNX1 (SORTING NEXIN 1); phosphoinositide binding / protein binding (390 aa)
       
      0.822
Bra002651
AT5G58440 (E=1e-230) SNX2a | SNX2a (SORTING NEXIN 2a); phosphoinositide binding (556 aa)
       
      0.822
Bra036684
AT2G20340 (E=2e-257) | tyrosine decarboxylase, putative (479 aa)
     
        0.510
Bra036683
AT2G20340 (E=2e-236) | tyrosine decarboxylase, putative (471 aa)
     
        0.510
Bra036466
AT2G20340 (E=7e-248) | tyrosine decarboxylase, putative (482 aa)
     
        0.510
Bra036465
AT2G20340 (E=5e-246) | tyrosine decarboxylase, putative (479 aa)
     
        0.510
Bra034917
AT1G43710 (E=2e-251) emb1075 | emb1075 (embryo defective 1075); carboxy-lyase/ catalytic/ pyridoxal phosphate binding (490 aa)
     
        0.510
Bra032190
AT1G43710 (E=3e-250) emb1075 | emb1075 (embryo defective 1075); carboxy-lyase/ catalytic/ pyridoxal phosphate binding (472 aa)
     
        0.510
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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