STRINGSTRING
Bra007051 protein (Brassica rapa) - STRING interaction network
"Bra007051" - AT3G54150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007051AT3G54150 (E=8e-151) | embryo-abundant protein-related (310 aa)    
Predicted Functional Partners:
Bra003996
AT1G69526 (E=9e-097) | UbiE/COQ5 methyltransferase family protein (199 aa)
           
  0.552
Bra026163
AT1G15125 (E=2e-164) | S-adenosylmethionine-dependent methyltransferase/ methyltransferase (396 aa)
           
  0.543
Bra040633
AT3G44840 (E=9e-122) | S-adenosyl-L-methionine-carboxyl methyltransferase family protein (351 aa)
           
  0.459
Bra001988
AT3G44840 (E=5e-119) | S-adenosyl-L-methionine-carboxyl methyltransferase family protein (351 aa)
           
  0.459
Bra035481
AT1G33030 (E=2e-160) | O-methyltransferase family 2 protein (356 aa)
     
   
  0.443
Bra009156
AT5G05980 (E=2e-260) ATDFB, DFB | ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B); tetrahydrofolylpolyglutamate synthase (820 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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