STRINGSTRING
Bra007056 protein (Brassica rapa) - STRING interaction network
"Bra007056" - AT3G54220 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007056AT3G54220 (E=2e-180) SCR, SGR1 | SCR (SCARECROW); protein binding / protein homodimerization/ sequence-specific DNA binding / transcription factor (316 aa)    
Predicted Functional Partners:
Bra012069
AT5G66420 (E=2e-304) | LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Uncharacterised conserved protein UCP033271 (InterPro-IPR008322), TIM-barrel signal transduction protein, predicted (InterPro-IPR009215); Has 820 Blast hits to 818 proteins in 200 species- Archae - 4; Bacteria - 603; Metazoa - 0; Fungi - 61; Plants - 24; Viruses - 0; Other Eukaryotes - 128 (source- NCBI BLink). (739 aa)
       
      0.958
Bra009549
AT5G03150 (E=2e-208) JKD | JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (516 aa)
       
 
  0.765
Bra005741
AT5G03150 (E=1e-188) JKD | JKD (JACKDAW); nucleic acid binding / protein binding / protein homodimerization/ transcription factor/ zinc ion binding (504 aa)
       
 
  0.765
Bra032541
AT1G03840 (E=1e-207) MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding (490 aa)
       
 
  0.762
Bra015271
AT1G03840 (E=3e-190) MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding (482 aa)
       
 
  0.762
Bra027050
AT1G62360 (E=9e-163) STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor (382 aa)
       
 
  0.760
Bra038707
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1019 aa)
       
 
  0.752
Bra034764
AT3G12280 (E=0.0) RBR1, RBR, RB, ATRBR1 | RBR1 (RETINOBLASTOMA-RELATED 1); transcription factor binding (1016 aa)
       
 
  0.752
Bra017842
AT4G37650 (E=5e-243) SHR, SGR7 | SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor (532 aa)
       
 
0.688
Bra011777
AT4G37650 (E=5e-247) SHR, SGR7 | SHR (SHORT ROOT); protein binding / sequence-specific DNA binding / transcription factor (533 aa)
       
 
0.686
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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