STRINGSTRING
Bra007057 protein (Brassica rapa) - STRING interaction network
"Bra007057" - AT3G54230 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007057AT3G54230 (E=3e-302) | nucleic acid binding / nucleotide binding / zinc ion binding (985 aa)    
Predicted Functional Partners:
Bra010569
AT4G36690 (E=5e-187) ATU2AF65A | ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding (554 aa)
     
  0.948
Bra001208
AT3G66652 (E=1e-128) | fip1 motif-containing protein (1267 aa)
     
 
  0.926
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
 
    0.923
Bra031477
AT1G60900 (E=1e-192) | U2 snRNP auxiliary factor large subunit, putative (594 aa)
     
  0.888
Bra027119
AT1G60900 (E=1e-192) | U2 snRNP auxiliary factor large subunit, putative (491 aa)
     
  0.888
Bra022941
AT2G33435 (E=2e-113) | RNA recognition motif (RRM)-containing protein (1261 aa)
     
  0.832
Bra040973
AT1G60900 (E=7e-137) | U2 snRNP auxiliary factor large subunit, putative (272 aa)
     
  0.832
Bra040940
AT4G36690 (E=4e-188) ATU2AF65A | ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding (562 aa)
     
  0.832
Bra031341
AT1G60900 (E=8e-068) | U2 snRNP auxiliary factor large subunit, putative (251 aa)
     
  0.832
Bra010656
AT1G60900 (E=4e-068) | U2 snRNP auxiliary factor large subunit, putative (253 aa)
     
  0.832
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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