STRINGSTRING
Bra007068 protein (Brassica rapa) - STRING interaction network
"Bra007068" - AT3G54360 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007068AT3G54360 (E=2e-190) | protein binding / zinc ion binding (409 aa)    
Predicted Functional Partners:
Bra017693
AT4G35090 (E=2e-294) CAT2 | CAT2 (CATALASE 2); catalase ; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (485 aa)
       
 
  0.643
Bra024896
AT2G01220 (E=8e-194) | nucleotidyltransferase (403 aa)
           
  0.542
Bra002435
AT5G22875 (E=8e-035) | unknown protein (69 aa)
           
  0.542
Bra012239
AT1G20630 (E=2e-291) CAT1 | CAT1 (CATALASE 1); catalase ; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (492 aa)
       
 
  0.480
Bra037775
AT5G64350 (E=3e-048) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
           
  0.468
Bra024287
AT5G64350 (E=1e-055) FKBP12, ATFKBP12 | FKBP12 (FK506-BINDING PROTEIN); FK506 binding / peptidyl-prolyl cis-trans isomerase (112 aa)
           
  0.468
Bra022105
AT3G01910 (E=1e-213) SOX, AT-SO, AtSO | SOX (SULFITE OXIDASE); sulfite oxidase (394 aa)
           
  0.418
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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