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Bra007071 protein (Brassica rapa) - STRING interaction network
"Bra007071" - AT3G54420 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra007071AT3G54420 (E=1e-148) ATEP3, ATCHITIV, CHIV | ATEP3; chitinase (273 aa)    
Predicted Functional Partners:
Bra032460
AT1G05590 (E=3e-287) HEXO2, ATHEX3 | HEXO2 (BETA-HEXOSAMINIDASE 2); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (582 aa)
         
  0.903
Bra014765
AT3G55260 (E=8e-291) HEXO1, ATHEX2 | HEXO1 (BETA-HEXOSAMINIDASE 1); beta-N-acetylhexosaminidase/ hexosaminidase/ hydrolase, hydrolyzing O-glycosyl compounds (550 aa)
         
  0.903
Bra004121
AT1G65590 (E=6e-265) HEXO3, ATHEX1 | HEXO3 (BETA-HEXOSAMINIDASE 3); beta-N-acetylhexosaminidase/ hexosaminidase (534 aa)
         
  0.903
Bra020951
AT4G19810 (E=2e-185) | glycosyl hydrolase family 18 protein (380 aa)
 
   
  0.689
Bra013426
AT4G19810 (E=7e-139) | glycosyl hydrolase family 18 protein (269 aa)
 
   
  0.531
Bra000892
AT4G19750 (E=9e-133) | glycosyl hydrolase family 18 protein (362 aa)
 
   
  0.526
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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